ShapeMI MICCAI 2025: Workshop on Shape in Medical Imaging
Date: Saturday, 27 September 2025
Time: 13:30–18:00
Session 1
Session chair: Gijs Luijten
| Time | Title | Speaker(s) |
|---|---|---|
| 13:30–13:40 | Introduction to the ShapeMI workshop | Gijs Luijten |
| 13:40–14:25 | Keynote: 3D Shape Analysis: From Discrete Optimization to Deep Spectral Matching | Lennart Bastian |
| 14:25–14:45 | Parametric shape models for vessels learned from segmentations via differentiable voxelization | Alina Dima; Suprosanna Shit; Huaqi Qiu; Robbie Holland; Tamara Mueller; Fabio Musio; Kaiyuan Yang; Bjoern Menze; Rickmer Braren; Marcus Makowski; Daniel Rueckert |
| 14:45–15:05 | US-X Complete: A Multi-Modal Approach to Anatomical 3D Shape Recovery | Miruna-Alexandra Gafencu; Yordanka Velikovva; Nassir Navab; Mohammad Farid Azampour |
| 15:05–15:25 | Large Intestine 3D Shape Refinement Using Conditional Latent Point Diffusion Models | Kaouther Mouheb; Mobina Ghojogh Nejad; Lavsen Dahal; Ehsan Samei; Kyle J. Lafata; W. Paul Segars; Joseph Y. Lo |
| 15:30–16:00 | Coffee break | — |
Session 2
Session chair: Gijs Luijten
| Time | Title | Speaker(s) |
|---|---|---|
| 16:00–16:45 | Keynote: The Role of Riemannian Geometry in Deep Learning | Tom Fletcher |
| 16:45–17.00 | Siemens Healthineers Cinematic Rendering on the Apple Vision Pro | Robert Schneider |
| 17:00–17:20 | Benchmarking Evaluation Metrics for Tubular Structure Segmentation in Biomedical Images | Meghane Decroocq; Charissa Poon; Matthias Schlachter; Henrik Skibbe |
| 17:20–17:40 | Anisotropic Fourier Features for Positional Encoding in Medical Imaging | Nabil Jabareen; Dongsheng Yuan; Dingming Liu; Foo-Wei Ten; Sören Lukassen |
| 17:40–18:00 | Spherical Brownian Bridge Diffusion Models for Conditional Cortical Thickness Forecasting | Fabian Bongratz; Ivan Stoyanov; Christian Wachinger |
| 18:00–18:05 | Closing | Gijs Luijten |
Posters
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PSGM-TR: A Transformer-Based Approach for Pulmonary Segment Segmentation Using Gaussian Mixture Models
Seunghee Koh; Chanho Lee; Jaehyun Choi; Minseo Kim; Youngno Yoon; Changyoung Lee; Junmo Kim
📄 Poster · 🎥 3-min Explainer -
A Unified Pipeline for Explainable Gait Analysis
Daniel Zieger; Jann-Ole Henningson; Bernhard Egger; Marc Stamminger
📄 Poster · 🎥 3-min Explainer -
ShapeKit
Junqi Liu; Dongli He; Wenxuan Li; Ningyu Wang; Alan Yuille; Zongwei Zhou
📄 Poster · 🎥 3-min Explainer -
Posterior Shape Models Revisited: Improving 3D Reconstructions from Partial Data Using Target-Specific Models
Jonathan Aellen; Florian Burkhardt; Thomas Vetter; Marcel Lüthi
📄 Poster · 🎥 3-min Explainer -
Anatomically-Focused Patches for Lightweight and Explainable Knee OA Grading
Tien-En Chang; Herve Lombaert
📄 Poster · 🎥 3-min Explainer -
A Statistical 3D Stomach Shape Model for Anatomical Analysis
Erez Posner; Ore Shtalrid; Oded Erell; Daniel Noy; Moshe Bouhnik
📄 Poster · 🎥 3-min Explainer -
AnatomyGen: Generating Anatomically Plausible Human Phantoms at High Resolution
Gasper Podobnik; Nidhi Balodi; Benjamin Killeen; Tomaž Vrtovec; Mathias Unberath
📄 Poster · 🎥 3-min Explainer -
Template-Based Cortical Surface Reconstruction with Minimal Energy Deformation
Patrick Madlindl; Fabian Bongratz; Christian Wachinger
📄 Poster · 🎥 3-min Explainer -
OsteoDeform: Osteophyte-Aware Shape Deformations of Distal Femur Models for Surgical Planning in Total Knee Arthroplasty
Srivibha Parthasarathy; Sowjanya Balaji; Vivek Maik; Manojkumar Lakshmanan; Mohanasankar Sivaprakasam
📄 Poster · 🎥 3-min Explainer -
Spline-based Shape Compression for Interventional Device Tracking
Roman Pavelkin; Luis A. Zavala-Mondragon; Fons van der Sommen; Ahmet Ekin
📄 Poster · 🎥 3-min Explainer -
End-to-End Learning of Multi-Organ Implicit Surfaces from 3D Medical Imaging Data
Farahdiba Zarin; Nicolas Padoy; Jérémy Dana; Vinkle Srivastav
📄 Poster · 🎥 3-min Explainer -
A Simple Modality-Agnostic Representation for Scoliosis Phenotyping
Owen Pullen; Amir Jamaludin; Andrew Zisserman
📄 Poster · 🎥 3-min Explainer -
A Scalable Toolkit for Modeling 3D Surface-based Brain Geometry
Yanghee Im; Leila Nabulsi; Melody Kang; Sophia Thomopoulos; Ana Diaz Zuluaga; Anders Dale; Andriana Karuk; Annabella Giorgio; Benson Mwangi; Boris Gutman; Bronwyn Overs; Carlos Jaramillo; Colm McDonald; Dara Cannon; Dan Stein; David Glahn; Diego Hidalgo-Mazzei; Diliana Pecheva; Dominik Grotegerd; Edith Pomarol-Clotet; Eduard Vieta; Emilie Olie; Enric Chertó; Fabio Sambataro; Fleur Howells; Freda Scheffler; Geraldo Busatto; Gerard Anmella; Giovana Zunta-Soares; Gloria Roberts; Henk Temmingh; Ian Gotlib; Ingrid Agartz; Jair Soares; James Karantonis; James Prisciandaro; Janice Fullerton; Joaquim Radua; Jonathan Savitz; Josselin Houenou; Kang Sim; Kenichiro Harada; Klaus Berger; Koji Matsuo; Lakshmi Yatham; Lars Westlye; Lisa Eyler; Lisa Furlong; Luisa Klahn; Marco Hermesdorf; Marcus Zanetti; Matthew Kempton; Matthew Sacchet; Mikael Landen; Mon-Ju Wu; Pedro Rosa; Philip Mitchell; Pravesh Parekh; Raymond Salvador; Rayus Kuplicki; Salvador Sarró; Susan Rossell; Tamsyn Rheenen; Theodore Satterthwaite; Tilo Kircher; Tomas Hajek; Udo Dannlowski; Xavier Caseras; Yuji Zhao; Ole Andreassen; Paul Thompson; Christopher Ching
📄 Poster · 🎥 3-min Explainer -
Deep Learning Enables Large-Scale Shape and Appearance Modeling in Total-Body DXA Imaging
Arianna Bunnell; Devon Cataldi; Yannik Glaser; Thomas Wolfgruber; Steven Heymsfield; Alan Zonderman; Thomas Kelly; Peter Sadowski; John Shepherd
📄 Poster 🎥 3-min Explainer -
GReAT: Leveraging Geometric Artery Data to Improve Wall Shear Stress Assessment
Julian Suk; Jolanda Wentzel; Patryk Rygiel; Joost Daemen; Daniel Rueckert; Jelmer Wolterink
📄 Poster · 🎥 3-min Explainer -
Shape vs Flow: A 2D Statistical Shape Analysis of the Projection of Common Iliac Veins in Patients with Deep Vein Thrombosis
Magdalena Otta; Karol Zając; Maciej Malawski; Ian Halliday; Chung Lim; Janice Tsui; Andrew Narracott
📄 Poster · 🎥 3-min Explainere -
Implicit Shape-Prior for Few-Shot Assisted 3D Segmentation
Mathilde Monvoisin; Louise Piecuch; Blanche Texier; Cédric Hémon; Anaïs Barateau; Jérémie Huet; Antoine Nordez; Anne-Sophie Boureau; Jean-Claude Nunes; Diana Mateus
📄 Poster · 🎥 3-min Explainer -
Point Set Registration Metrics Reloaded for Computer-Assisted Surgery
Xinzhe Du; Shixing Ma; Mingyang Liu; Zhengyan Zhang; Zhe Min
📄 Poster -
Benchmark-Ready 3D Anatomical Shape Classification
Tomáš Krsička; Tibor Kubík
📄 Poster · 🎥 3-min Explainer -
SimCortex: Collision-Free Simultaneous Cortical Surfaces Reconstruction
Kaveh Moradkhani; R. Jarrett Rushmore; Sylvain Bouix
📄 Poster -
Parametric shape models for vessels learned from segmentations via differentiable voxelization
Alina Dima; Suprosanna Shit; Huaqi Qiu; Robbie Holland; Tamara Mueller; Fabio Musio; Kaiyuan Yang; Bjoern Menze; Rickmer Braren; Marcus Makowski; Daniel Rueckert
📄 Poster
Some presenters also shared a poster and short video alongside their oral talk on last notice.
These materials are listed here for reference.
- [Anisotropic Fourier Features for Positional Encoding in Medical Imaging]
Nabil Jabareen; Dongsheng Yuan; Dingming Liu; Foo-Wei Ten; and Sören Lukassen
📄 Poster · 🎥 3-min Explainer